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Comparative Genomics/Transcriptomics

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IDTitleSection/TopicAuthorsKeywords
258Comparative transcriptomics indicate changes in cell wall organization and stress response inseedlings during spaceflight
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Comparative Genomics/TranscriptomicsJohnson, Christina; Subramanian, Aswati; Pattathil, Sivakumar; Correll, Melanie; Kiss, John.Arabidopsis
cell size
cell wall
dehydration
Transcriptome
microgravity
spaceflight
205De Novo Transcriptome Assembly and Annotation of Mentzelia Section Bartonia (Loasaceae)
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Comparative Genomics/TranscriptomicsDevitt, Jessica; Schenk, John J..Differential gene expression
drought
Mentzelia
next generation sequencing
RNA-Seq
Transcriptome
266Development of PCR-based Transposable Element Assays for Verification of Pearl Millet-Napiergrass Hybrids
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Comparative Genomics/TranscriptomicsCenteno, Chris; Jessup, Russell; Hatch, Stephan ; Stelly, David.Pennisetum glaucum
Pennisetum purpureum
Transposable Elements
qPCR
Comparative Genomics
Pearl Millet-Napiergrass Hybrids 
Pearl Millet
Napiergrass
Marker Survey
Vegetation survey methods comparison
Cytogenetic Survey
311Evolution of the NB-ARC Protein Domain as a Major Signaling Component of the Plant Defense Response
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Comparative Genomics/TranscriptomicsAndersen, Ethan; Nepal, Madhav P..Evolution of plant immunity
plant defense surveillance
disease resistant genes
NBS-LRR proteins
275Genome-wide identification of disease resistant genes in wheat (Triticum aestivum L.; Poaceae) 
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Comparative Genomics/TranscriptomicsAndersen, Ethan; Nepal, Madhav P.; Ali, Shaukat; Yen, Yang; Neupane, Surendra.CNL disease resistant genes
purifying selection
gene duplication
gene diversification and maintenance 
389Genome Evolution and Diversification in Palms
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Comparative Genomics/TranscriptomicsBarrett, Craig; Bacon, Christine; Antonelli, Alexandre; McKain, Michael.Polyploidy
Arecaceae
Monocots
commelinids
transposable element
genome size
chromosome number
ancestral state
Whole Genome Duplication
paralogous genes
269Intraindividual genomic variation and mutation in apple (Malus x domestica)
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Comparative Genomics/TranscriptomicsRyan, Gillian; Ashwal, Eli; Turgman-Cohen, Salomon; Cohen, Jim.Malus
Apple
genetic diversity
variation
Rosaceae
Mutation
287Patterns of plastome degradation in the Aeginetieae clade of Orobanchaceae mirror those in mycorrhizal heterotrophs of Orchidaceae
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Comparative Genomics/TranscriptomicsRandle, Christopher P.; Yu, Wen-Bin; Morawetz, Jeffery; Barrett, Craig; dePamphilis, Claude.Orobanchaceae
plastome
parasitic plant
evolution
Aeginetieae
112The Effect of Polyploidy on Transcriptome Size and Dosage Responses in Natural and Synthetic Polyploids
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Comparative Genomics/TranscriptomicsCoate, Jeremy; Doyle, Jeff.Polyploidy
Transcriptome
Gene Dosage Response
137Transcriptional Profiles of In Vivo Fertilized Rice Gametes (Oryza sativa L)
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Comparative Genomics/TranscriptomicsRUSSELL , SCOTT D; Anderson, Sarah; Jones, Daniel; Chesnut, Joshua; Johnson, Cameron; Khanday, Imtiyaz; Sundaresan, V; Gou, Xiaoping.rice
zygote
Transcriptome
embryogenesis
529Transcriptome analysis of sexual, apomictic, and parthenogenetic genotypes in Erigeron (Asteraceae)
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Comparative Genomics/TranscriptomicsVIRE, JAMES; NOYES , RICHARD DAVID.Asteraceae
Transcriptome
Bioinformatics
Erigeron
apomixis

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